Archive for the ‘DNA Detective’ Category

 

DNA Test That Distinguishes Identical Twins May Be Used in Court for First Time

Tue, Dec 16th, 2014

In 2004, two young women were abducted at gunpoint while walking home near Boston [United States] at night. The crimes happened eight days apart, but the pattern was the same: The women were shoved into a car by two men, pistol-whipped, driven to a different location, and raped. While collecting her clothes, the second victim managed to grab the condom one of the men had worn; she hid it in her pocket, and turned it in as evidence.

One of the two men involved pleaded guilty to the attacks in 2012. The other remained at large. Police had a suspect, but they couldn’t pin the crime on him due to a twist of genetic fate: He had an identical twin brother, and DNA from the condom matched both siblings. But now, a decade after the assaults, scientists have developed a genetic test that can distinguish between identical twins, and it may be used in court for the first time in this case.

The second suspect is 33-year-old Dwayne McNair. In September, McNair was arraigned on eight counts of aggravated rape and two counts of armed robbery, stemming from the two sexual assaults.

Traditional forensic methods can’t differentiate between DNA belonging to identical twins

He’s been a suspect in the crimes since 2007. According to court documents, a standard genetic test linked him to semen collected from the second attack back in 2008. That would ordinarily be enough to justify charges, but Dwayne wasn’t the only person whose DNA matched that semen. His twin, Dwight, was also a match. Traditional forensic methods can’t differentiate between DNA belonging to identical twins, and without a clear way to establish whether Dwayne or Dwight had left the semen at the scene, police had no probable cause to make an arrest in 2008.

But in 2012, the other man involved in the assaults told investigators that Dwayne had been his partner in the crimes. And earlier this year, prosecutors learned of a new forensic genetics test claiming to differentiate between biological samples belonging to identical twins. According to the Suffolk County District Attorney the test points to Dwayne, not Dwight, as the perpetrator of the 2004 assaults.

Normally, forensic tests work by extracting and amplifying regions of DNA collected from a crime scene. Then, investigators look for a match between the evidence and a suspect’s genetic sequence. Ordinarily, this kind of testing is sufficient: Most humans vary from one another enough for investigators to easily identify whether a suspect left blood, skin, hair, semen, or something else at a crime scene.

This is not true with identical twins. Grown from the same, single fertilized egg, monozygotic twins have nearly identical genomes. So, for decades, twins committing crimes had a relatively easy way to establish doubt—based on DNA evidence alone, their identical sibling would be equally as likely to have deposited whatever genetic material might have been left at a crime scene.

Maybe not anymore.

Using what’s known as ultra-deep, next-generation sequencing, a team in Germany has developed a test that claims to reliably identify which twin a biological sample belongs to. The test works by taking a close look at the genetic letters (called base pairs) comprising the 3 billion-base-pair human genome. Because mutations randomly occur during development, even genetically “identical” twins will vary at a handful of locations, says Burkhard Rolf, a forensic scientist at Eurofins Scientific, the company that developed the test.

The sequence mutations are random, so it’s incredibly unlikely they’d be the same in both twins—and it’s those discrepancies that can be used to pin a crime on a twin.

In a proof-of-principle study, Rolf and his colleagues analyzed sequences from a pair of twins and one of their kids. Scientists could positively identify which twin was the child’s father, based on five single base pair differences present in the father and son, but not in the uncle. They published the work earlier this year in Forensic Science International: Genetics; it’s this paper that caught the Suffolk District Attorney’s attention.

Results from Eurofins, showing one of the mutations

The office sent evidence to Eurofins for analysis. After the results came back, the McNair was indicted and arraigned for the crimes in September.

“At arraignment, the assigned prosecutor cited the Eurofins test results and said Dwayne McNair was ‘two billion times more likely’ than his twin to have been the source of the crime scene DNA,” says Suffolk DA spokesperson Jake Wark.

Now, the question is: Will the genetic test be admissible in court? It would be the first time it’s been used in the United States. A preliminary hearing has been scheduled for Jan. 12, 2015, after which a judge will decide whether evidence from the test is admissible.

Some experts seem to think it will hold up.

“It is scientifically sound and reliable, has a high probability of success, is based on standard, generally accepted forensic DNA sequencing technology, and has an infinitesimally low risk of error if proper laboratory practices are followed,” said Bruce Budowle, in an affidavit to the court. Budowle, who is now at the University of North Texas Health Science Center, once led the FBI’s DNA typing laboratory.

Yet some scientists are a bit wary. “I think it’s an interesting idea,” says computational biologist Yaniv Erlich of the Massachusetts Institute of Technology. The work published by the Eurofins team is accurate, he says, but is only based on one pair of twins. In an ideal world, Erlich would test the method using dozens of twin pairs, while simulating the small amounts of DNA that might be found at crime scenes.

He’s also concerned about the test’s applicability to different tissue types, and blood in particular (which is not an issue in the McNair case). In 2011, Erlich took a close look at the blood of identical twins who shared a placenta during development; early on, these twins are also sharing blood – even as adults, each twin has blood cells with DNA from the other twin.

“Think about one twin being Coca-Cola, the other twin is Sprite,” Erlich said. Their blood will be a mix of Coke and Sprite. “It’s not 50-50,” he said, “but it could be 20-80.”

In other words, while the Eurofins method might not work as well with blood samples left at crime scenes. But when it comes to saliva, skin, or semen, it could mean that identical twins are about to lose their genetic get-out-of-jail-free card.

SOURCE: This article was first published by Wired on 4 December 2014 and written by Nadia Drake – http://www.wired.com/2014/12/genetic-test-distinguishes-identical-twins-may-used-court-first-time/

Dr Hancock & DNA Project featured in PUB 10 year celebratory book

Fri, Dec 5th, 2014

Dr Carolyn Hancock and Prof Valerie Corfield at the PUB book launch.

The Public Understanding of Biotechnology (PUB), an initiative of the Department of Science and Technology (DST), celebrated a decade of existence in 2013 – an important milestone for the first communication programme on biotechnology in the country.

As part of its celebrations, PUB called for nominations to recognise contributions to the South African biotechnology sector by individuals for publication in a 10 year celebratory book highlighting their activities, institutions and contributions to the Biotechnology sector.

The book was officially launched by PUB at the Melrose Arch Hotel in Johannesburg on the 25th of November 2014.

DNA Project director Dr Carolyn Hancock was amongst those recognised and profiled for her work under the ‘Biotechnology Communication’ category.

Additionally, Prof Valerie Corfield, one of our Western Cape DNA Awareness trainers, was also recognised for her contribution to biotechnology, though not specifically through the DNA Project.

Congratulations to Carolyn and Valerie and all the successful nominees who were profiled for their amazing contributions to biotechnology =)

Young Science Communicator’s Competition

Sun, Nov 23rd, 2014

Click here for inspiration

The Young Science Communicator’s Competition (YSCC) specifically challenges young scientists and researchers between the ages of 18 and 35 to communicate their world to a larger audience beyond their scientific community. Scientists are by nature passionate people. This can be reflected in the way stories are told and communicated. You, the scientist, can engage and excite your community about your science. You can connect and show your science is relevant to people in their everyday lives.

SAASTA recognise that different media can be used to convey messages about science. This year’s competition awards four categories:

NEWSPAPER/MAGAZINE ARTICLE

As a traditional mode of communication, print media can reach a wide readership and interest the public in science and science-related issues.

RADIO SCRIPT

Radio has far-reaching potential into areas where other forms of communication may be limited, such as in rural communities. Successful radio communication conjures up the “theatre of the mind”.

NEW MEDIA: VIRAL VIDEO

The viral nature of popular and entertaining videos that are spread by social media and e-mail makes them a highly effective method of reaching many people in a short period of time.

OPEN CATEGORY

Other effective forms of communication include drama, song, poetry, cartoons and more.

*Please see the competition rules for more information relating to the submission of entries for each category.

CLOSING DATE: 5 January 2015

Click here for more information.

KZN Roadshow 2014: A look back

Thu, Nov 13th, 2014

Earlier this year the DNA Project held its second roadshow, this time conducted in KwaZulu-Natal, to further disseminate our DNA CSI message.

Our KZN Trainer Rhys McColl, who facilitated this year’s roadshow, briefly looks back at his experience…

As a Durban based trainer I have been predominantly involved with workshops in and around the Durban area.  In order to spread the DNA projects message around the KZN province, a “DNA Project Roadshow” was organised from the 8th – 11th of April 2014.  These workshops were held in Ladysmith, Newcastle, Ulundi, Richards Bay and Port Shepstone.

Newcastle

The first workshop was held at the town hall in the historically important city of Ladysmith.  A number of uniformed officers and members of the flying squad were in attendance to gain important instruction in terms of crime scene management.

The second workshop took place in the Newcastle farmer’s hall.  A very good turnout was seen thanks in part by the organisation of our workshop co-ordinator, Maya Moodley, and the enthusiastic approach by the Newcastle police trainers.  The audience was made up by a large number of police as well as paramedics and security personnel.  All those in attendance were eager to learn and the workshop was a great success.

Ulundi

On the third day of the roadshow, members of the Ulundi police force met at the IFP caucus room in the legislative building in Ulundi.  Once again there was a very good turnout.  On a very hot day in central KZN, a great workshop was had with everybody involved gaining insight into the importance of DNA evidence.

The penultimate talk was held at the Flamingo community hall in Richards Bay.  Once again there was a very good turnout on a hot and humid day on the coast.  Over 100 people attended the workshop with members of the police, paramedics and security companies present.

Richards Bay

The final stop in the roadshow was at the town hall in the South Coast town of Port Shepstone.  This final day would in fact turn out to be the most rewarding with a phenomenal attendance of over 250 people.  Of the 250 odd people, a large majority were police officers, however, a number of paramedics and community policing forum members were also present.

All in all the roadshow was a great success with over 550 people attending the 5 workshops and the success of this event has hopefully laid the foundation for many roadshows to come.

Rhys McColl (KZN DNA Awareness Trainer)

Highlights from ISHI25, Phoenix, Arizona and SFO, USA

Mon, Oct 20th, 2014

Vanessa Lynch outside the Californian Dept. of Justice Forensci DNA Lab, follwoing a tour of the facility and a presentation

Vanessa Lynch outside the Californian Dept. of Justice Forensic DNA Lab, following a tour of the facility and a presentation.

It is hard to believe that almost three weeks have passed since I set off for the USA where I was so unbelievably lucky to have attended and presented at the 25th International Symposium on Human Identification (ISHI25) in Phoenix, Arizona as well as visit and present at two significant Forensic Science Labs in San Francisco, CA.

Thank you to both Promega and Thermo Fisher for providing me with this amazing opportunity.

At any given time, I honestly felt that I needed to pinch myself to assure myself that I was not dreaming! Not only did I meet renowned international leaders in the field of forensic DNA technology, but I learned so much about how and why different administrations treat the collection and retention of DNA profiles in the way that they do.

In so doing, I was able to gain greater perspective on what we are doing in South Africa, where we are in keeping with the advances in this technology and where sadly, we are still falling way, way behind. I say this because whilst we are still fighting for our DNA Act to become operational, and have just moved from sequencing 10 to 16 loci for our forensic DNA profiles, the rest of the world with developed DNA Databases, are using 24 loci and talking about implementing New Generation Sequencing – with this platform, and I quote (!), “there is increased interpretation of degraded DNA because SNPs can theoretically be amplified with as little as 50-70 nucleotide long amplicons instead of the longer amplicons needed for STRs.” Click here to read more if this excites you!

Vanessa Lynch with John Butler, author of Advanced Topics in Forensic DNA Typing: Interpretation. His 1st edition of Forensic DNA Typing, published in 2001, quickly established itself as the gold-standard reference for the field. Over the next ten years, the vast amount of new information uncovered has resulted in this new volume.

Vanessa Lynch with John Butler, author of Advanced Topics in Forensic DNA Typing: Interpretation. His 1st edition of Forensic DNA Typing, published in 2001, quickly established itself as the gold-standard reference for the field. Over the next ten years, the vast amount of new information uncovered has resulted in this new volume.

For an overview of the ISHI conference and what was presented, please read the below summary by Terri Sundquist, which also happens to briefly mention my presentation…

“I was one of almost 1,000 people who attended the 25th International Symposium on Human Identification (ISHI25) in Phoenix, Arizona. This scientific meeting brings together DNA analysts from forensic and paternity labs, research scientists and others with an interest in DNA-based identification to learn about new technologies, policy and process changes, and current and future trends in DNA typing. There were so many great presentations and learning opportunities, how do I pick just a few of them to highlight?”

To read more, please click here http://www.promegaconnections.com/highlights-from-ishi25/

On a lighter note, two conversations which I found somewhat bemusing, were the ones I had with the Forensic Scientists from the Singapore and Chinese DNA Forensic Labs respectively.

The first conversation, with Singapore, revolved around the Oscar Pistoruis Trial: I was simply told that in Singapore, Mr Pistorius would now be dead – for the simple reason that it is illegal to own a firearm in Singapore, and if found to have one in your possession, it is life imprisonment. If anyone discharges a firearm, even accidentally, into the floor, it is the death sentence. It is no wonder that when I asked the scientist from Singapore how many criminal cases they deal with a year, the answer was : no more than 20 – per year!

New Generation Sequencing....

New Generation Sequencing....

The other conversation that left my jaw dropping, was with the Chinese scientist. This scientist correctly deduced that our number of arrestees and convicted offenders per annum is going to far outweigh our laboratory capacity, (especially at the start of the new DNA Act’s implementation) and accordingly suggested that we send samples to China to be processed because they can process as many as 800,000 samples per month — compare this to our anticipated capacity of approximately around 34,000 per month!

On that note, let’s not forget that our Minister of Police, Mr Nkosinathi Nhleko, has not yet declared our DNA Act to be operational nor has the appointment of the National Forensic Oversight and Ethics Board been appointed — two critical factors which inhibit the implementation of the new DNA Act. If we are not taking samples from arrestees and convicted offenders, that means we are not loading profiles onto our DNA Database. It is no longer a question of whether a DNA Database is a valuable criminal intelligence tool — it is a given and the use and successes of Forensic DNA Databases are undisputed worldwide.

Unlike in Singapore, in South Africa, we probably have  20 criminal cases happening per minute, which is why the urgent operational date of this Act needs to be declared.

We have the tools, now let’s get on with the business of using those tools! Please Mr Minister – this ought to be a top priority on your agenda.

Vanessa Lynch

Thank you OSF-SA

Fri, Oct 17th, 2014

Yesterday I submitted our final progress report to the Open Society Foundation for South Africa [OSF-SA]. This brings to a close 7 years of funding and support we have received from the OSF-SA since 2007.

OSF-Header

The OSF-SA first contacted me on the 3rd October 2007 following a programme on Carte Blanche which highlighted the work we were doing and what we were trying to achieve in SA. The then Programme Director of the Criminal Justice Initiative of the OSF-SA ,  having watched the programme, sent me the following email:

“Dear Vanessa

The Open Society Foundation for South Africa (OSF-SA) is a grant making organisation based in Cape Town (www.osf.org.za). The goal of the Criminal Justice Initiative (CJI) as a programme of the Foundation is to build accountability within the criminal justice system with the intention of ensuring a more humane, efficient and accountable criminal justice process as a whole. To this end, the CJI provides funding to a range of NGO’s working in the field of criminal justice.

While we can give no guarantees of financial support at this stage, we would be very interested in hearing more about the DNA Project and its work. If you are interested in setting up an initial exploratory meeting with us, please give me a call or send me an e-mail.

Kind regards
Louise”

Well, the rest as they say, is history. Following a meeting the next week with the OSF-SA and after drafting and submitting my first funding application on behalf of the DNA Project on the 19th October 2007, The OSF-SA provided The DNA Project with a development grant for R43 000 on the 3rd December 2007. This grant was our first official funding grant ever received and allowed the DNA Project to get off the ground and start fulfilling its objectives. Since that time, the OSF-SA has provided continuous assistance to our organisation by supporting the following initiatives:

• Developing our Post Graduate Honours Degree in Forensic Analysis;
• Lobbying Government to pass the DNA Act;
• Attending the Interpol DNA User’s Conference in Lyon in both 2010 and 2013;
• Producing and distributing DNA and Crime Scene Awareness Material throughout SA;
• Creating training protocols for DNA and crime scene awareness workshops;
• Hosting national DNA and Crime Scene Awareness Workshops amongst first on crime scene responders and the general public;
• Funding the operational costs of the organisation such as audit fees, support staff salaries and travel;
• Developing the website;
• Hosting a series of Legal workshops for officers of the court to ensure DNA’s optimal use in the criminal justice system;
• Registering a series of training materials and workshops with SASSETA for the DNA and crime scene awareness training protocols have developed;
• Publishing a paper for the CJI Occasional Paper Series on Forensic DNA Profiling.

May we take this opportunity to thank the OSF-SA for helping us to pursue and fulfil our stated objectives to date. Whilst our work is by no means over, their unconditional support of our organisation and the continued trust and belief they have shown in the work that we have done since 2007, has carried us through some of the most groundbreaking and challenging years we have faced in our efforts to maximise the use of DNA profiling in South Africa to help resolve crime.

with heartfelt appreciation and thanks from,

Vanessa Lynch and the rest of  The DNA Project Team.


Draft of forensic DNA regulations published for public comment

Tue, Oct 14th, 2014

Under Section 15AD of the South African Police Service Act, draft regulations outlining how the South African Police Service (SAPS) will be allowed to take DNA samples from suspects have been drawn up in terms of Section 6 of the Criminal Law (Forensic Procedures) Amendment Act of 2013 [the “DNA ACT”].

These draft regulations were published on the 9th of October 2014 in Government Gazette 38074 for public comment.

All interested parties have been invited to comment on the draft regulations within 21 days of the publication – i.e. by no later than the 30th of October 2014.

Comments must be made in writing and directed to:

Brigadier M van Rooyen
Legal Services: Governance, Policy and Legislation Management
South African Police Service

E-mail address: vanrooyenmsaps.gov.za

Fax number: (012) 393 7098

Street address:
Room No. 311
3rd Floor
Presidia Building
255 Pretorius Street
Cr. Paul Kruger and Pretorius Street
PRETORIA

To view a PDF copy of Government Gazette 38074, please click here.

To view a PDF summary of the DNA Act, please click here.

Once the submissions have been received and considered, the draft regulations will be submitted to the Minister of Police for approval.

The draft regulations focus on, inter alia:

  • The taking of a buccal sample;
  • The keeping of records in respect of collected buccal and crime scene samples;
  • Preservation and timely transfer of collected samples to the Forensic Science Laboratory;
  • Conducting of comparative searches;
  • Communication of forensic DNA findings and related information;
  • DNA examinations conducted at the Forensic Science Laboratories;
  • Request for access to information stored on the NFDD;
  • Follow-up of forensic investigative leads;
  • Destruction of buccal samples;
  • Notification of court findings;
  • Removal of forensic DNA profiles from the NFDD;
  • Protocols and training relating to familial searches;
  • Complaints to the Forensic Oversight and Ethics Board;
  • Reports;
  • Information technology infrastructure and systems; and
  • Requests for removal of DNA profiles.

Forensic Science: Myth vs Fact

Thu, Oct 9th, 2014

Crime Scene Investigation

Myth: A single investigator trained in forensics can collect and analyze all evidence from a crime scene.

Fact: Crime scene investigation and analysis requires a team of knowledgeable experts to collect and process evidence. Because of their training and expertise, investigators and analysts tend to specialize in a particular forensic discipline such as fingerprints, firearms or DNA analysis. The process is tedious and time?consuming because investigators must collect all possible evidence without knowing in advance what is relevant to an investigation. In a separate step, only highly trained laboratory?based analysts from various disciplines can conclusively examine crime scene evidence and report their findings.

Alternate Light Source (ALS)

Myth: With a blue light, investigators can detect the presence of blood at a crime scene.

Fact: While television programs often depict the use of a special light to detect blood at a crime scene, the use of Luminol alone in a dark room without special lighting allows visual detection of the presence of blood. Other bodily fluids, such as saliva and semen, become fluorescent under an ALS.

DNA Analysis

Myth: Advanced DNA analysis automatically identifies an individual within minutes.

Fact: DNA analysis takes several hours for even simple cases, although a laboratory typically takes 30 days or more to complete DNA testing. In addition, the FBI’s Combined DNA Index System (CODIS) stores no personal data with its 7.5 million records. To confirm identity, analysts search other databases containing information about convicted offenders, unsolved crimes and missing persons at the local, state and national levels. For more information, visit www.dna.gov/dnadatabases/codis.

Drugs and Explosives Testing

Myth: A trained crime scene investigator can usually identify an unknown powder by sight, smell or taste.

Fact: Contrary to television portrayals, crime scene specialists never taste an unknown substance to determine its composition because of the danger posed by the potential presence of poisons. Instead, investigators are armed with hand?held, portable kits to conduct preliminary, presumptive testing of unknown powders in the field. Only confirmatory analysis with sophisticated instrumentation can conclusively determine the components of a sample powder submitted as part of an investigation.

Digital Evidence

Myth: The Internet Protocol (IP) address can identify who sent an e?mail.

Fact: An IP address is analogous to a telephone number. While both numbers are uniquely assigned, investigators can determine only the person who pays for the IP address or telephone number by using public records and the legal process. Whether tracking an IP address to a public access router or to a private home, investigators still need to use old?fashioned police work to place a suspect “at the keyboard.”

Ballistics

Myth: You can always match a bullet with the gun that fired it.

Fact: The Bureau of Alcohol, Tobacco, Firearms and Explosives (ATF) maintains the National Integrated Ballistics Information Network (NIBIN), which allows law enforcement agencies to scan and compare digital images of the firearm markings on bullets and cartridge casings. However, if a gun has been modified after firing or if the bullet is badly damaged, the bullet will no longer match the barrel and a link cannot be confirmed. Frequently, cartridge casings provide more information than the actual bullet fired.

SOURCE: National Forensic Science Technology Center (NFSTC) – www.nfstc.org

A message from our amazing Funders: Change a Life

Fri, Sep 19th, 2014

Dear Change a Lifer

Every year in September, we get together for this event – great people, fantastic camaraderie, huge commitment – it is truly amazing. And then you realize that we have done this seven times and by the time we hand out the money from this tour, we will have given R25m to our project owners and their projects, and those feelings of amazement really become quite overwhelming.

It makes me extremely proud to be a small part of this – as I know it does for all of you.

In whatever capacity you contributed – as a cyclist, a sponsor, a member of the incredibly dedicated support crew – and so many of you have more than one role – it is your commitment that has made this Mystery Masquerade Tour yet another huge success for Change a Life.

This commitment is best demonstrated by the supreme efforts of the MTB team on the last day – 12 hours in the saddle – 255 Ks. Quite exceptional.

It’s the consistency of your support, however, that demonstrates the loyalty to Change a life – in whatever capacity you participate. So many of you were back again. The support crew epitomise this with many examples of dedication of which I will mention just two: Raymond Tloubatla, an ex‑Computershare employee, took leave from his new employer just to be with us and Wayne Fillis, whose only connection is that he is a friend of one of our employees, did likewise.

And when it comes to talking about loyalty and consistent commitment, what about Jonathan Scott? He gives so much of himself and his time in ensuring that we all have an exceptional experience.  He is always available and gives so much more than determining the route – he gets involved in every aspect of putting the Tour together; his knowledge and advice are absolutely invaluable.

Vanessa Lynch giving "Change a Lifers" feedback at a past event

Vanessa Lynch giving "Change a Lifers" feedback at a past event

We have now completed two-thirds of the seventh tour with the most important element – the report back – still to come. We look forward to seeing you all again at our next family gathering in about six weeks’ time when our project owners bring us up to date on the progress they have made.

On behalf of Ursula and myself, Change a Life and the Mike Thomson Change a Life Trust, our dedicated project owners and all the people whose lives they are changing – a most sincere thank you for your generous participation in the seventh Change a Life Cycle Tour and for the loyal support you all continue to give us.

We are making a difference!

Stan and Ursula

30 years of DNA fingerprinting

Thu, Sep 18th, 2014

Sir Alex holding a copy of the first DNA profile.

In 1984, Alec Jeffreys discovered the technique of genetic fingerprinting in a laboratory in the Department of Genetics at the University of Leicester.

30 years later that discovery has proved to be not just something for human identification but ‘identification’ period.

DNA Fingerprinting and subsequently DNA Profiling has revolutionised the field of Forensic Science and also the way paternity and immigration disputes are resolved.

Fascinating interview with Prof Sir Alec Jeffreys – University of Leicester.